Community Genetic Diversity Analysis

gimmeSAD: An integrated model of population genetics and community ecology

MESS: Massive Eco-Evolutionary Synthesis Simulations

easyCGD: Quantifying and analyzing community genetic diversity structure

RADSeq Assembly/Anaylsis

ipyrad: Interactive assembly and analysis of RADseq data sets (co-author)

Comparative Phylogeography

msBayes: Complex and flexible comparative phylogeographic inference (co-author)

PTA: Phylogeographic Temporal Analysis for genome-scale datasets

Population Genetics Utilities

easySFS: Selection of population size projection for construction of the site frequency spectrum